openCVE: Open Cancer Variant Explorer (CVE) Shiny app
In CVE: Cancer Variant Explorer
Description
Usage
Arguments
Examples
Description
The openCVE function opens the CVE Shiny app.
The function to supplement the R package with the Shiny app was suggested by Dean Attali (http://deanattali.com). Currently, the only extension available is a melanoma co-expression network (WGCNAmelanoma).
Usage
1
Arguments
x
A dataframe (for single file) or list (for multiple oncotator output files)
sample_names
A character vector with sample name(s)
extension
A character vector of extention name
Examples
1
2
openCVE(crcCase,"case study")
openCVE(melanomaCase,"case study WGCNA",extension="WGCNAmelanoma")
CVE documentation built on Oct. 31, 2019, 3:59 a.m.
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Description Usage Arguments Examples
Description
The openCVE function opens the CVE Shiny app. The function to supplement the R package with the Shiny app was suggested by Dean Attali (http://deanattali.com). Currently, the only extension available is a melanoma co-expression network (WGCNAmelanoma).
Usage
1 |
Arguments
x |
A dataframe (for single file) or list (for multiple oncotator output files) |
sample_names |
A character vector with sample name(s) |
extension |
A character vector of extention name |
Examples
1 2 | openCVE(crcCase,"case study")
openCVE(melanomaCase,"case study WGCNA",extension="WGCNAmelanoma")
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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