openCVE: Open Cancer Variant Explorer (CVE) Shiny app

Description Usage Arguments Examples

View source: R/openCVE.R

Description

The openCVE function opens the CVE Shiny app. The function to supplement the R package with the Shiny app was suggested by Dean Attali (http://deanattali.com). Currently, the only extension available is a melanoma co-expression network (WGCNAmelanoma).

Usage

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openCVE(x, sample_names = NULL, extension = FALSE)

Arguments

x

A dataframe (for single file) or list (for multiple oncotator output files)

sample_names

A character vector with sample name(s)

extension

A character vector of extention name

Examples

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openCVE(crcCase,"case study")
openCVE(melanomaCase,"case study WGCNA",extension="WGCNAmelanoma")

CVE documentation built on May 2, 2018, 2:04 a.m.