get.oncotator.anno: Open Cancer Variant Explorer (CVE) Shiny app
In CVE: Cancer Variant Explorer
Description
Usage
Arguments
Examples
View source: R/get.oncotator.anno.R
Description
The get.oncotator.anno retrieves annotation from the Oncotator database.
Usage
1
Arguments
x
A matrix containing the columns chromosome, start, end, reference_allele and observed_allele.
Examples
1
2
3
4
5
6
exCase <- data.frame(chr = rep(10, 3),
start = c("100894110", "100985376", "101137905"),
end = c("100894110", "100985376", "101137905"),
ref_allele = c("T", "C", "G"),
obs_allele = c("G", "A", "A"))
get.oncotator.anno(exCase)
CVE documentation built on Oct. 31, 2019, 3:59 a.m.
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Description Usage Arguments Examples
View source: R/get.oncotator.anno.R
Description
The get.oncotator.anno retrieves annotation from the Oncotator database.
Usage
1 |
Arguments
x |
A matrix containing the columns chromosome, start, end, reference_allele and observed_allele. |
Examples
1 2 3 4 5 6 | exCase <- data.frame(chr = rep(10, 3),
start = c("100894110", "100985376", "101137905"),
end = c("100894110", "100985376", "101137905"),
ref_allele = c("T", "C", "G"),
obs_allele = c("G", "A", "A"))
get.oncotator.anno(exCase)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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