get.oncotator.anno: Open Cancer Variant Explorer (CVE) Shiny app

Description Usage Arguments Examples

View source: R/get.oncotator.anno.R

Description

The get.oncotator.anno retrieves annotation from the Oncotator database.

Usage

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Arguments

x

A matrix containing the columns chromosome, start, end, reference_allele and observed_allele.

Examples

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exCase <- data.frame(chr = rep(10, 3),
    start = c("100894110", "100985376", "101137905"),
    end = c("100894110", "100985376", "101137905"),
    ref_allele = c("T", "C", "G"),
    obs_allele = c("G", "A", "A"))
get.oncotator.anno(exCase)

CVE documentation built on Nov. 1, 2018, 2:23 a.m.