GetRegulatedNodes: get regulated nodes

Description Usage Arguments Value

View source: R/GetRegulatedNodes.r

Description

This function will compute the nodes regulated by the given hypothesis gene and write the results to a file

Usage

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GetRegulatedNodes(PPInet, Expressiondata, delta, hypothesisGene = "",
  signOfHypothesis = 1, outputfile = "")

Arguments

PPInet

a protein-protein interaction network

Expressiondata

a table of observed gene expression data

delta

the number of edges to follow along the network. This should typically be between 1 and 5 dependent on network size/topology

hypothesisGene

the name of the hypothesis gene

signOfHypothesis

the sign of action expected from the hypothesis, +1 for up regulation, -1 for down

outputfile

the file to which the results should be written

Value

Nodes regulated by hypothesis gene


CausalR documentation built on Nov. 8, 2020, 5:25 p.m.