Description Usage Arguments Value
View source: R/GetRegulatedNodes.r
This function will compute the nodes regulated by the given hypothesis gene and write the results to a file
1 2 | GetRegulatedNodes(PPInet, Expressiondata, delta, hypothesisGene = "",
signOfHypothesis = 1, outputfile = "")
|
PPInet |
a protein-protein interaction network |
Expressiondata |
a table of observed gene expression data |
delta |
the number of edges to follow along the network. This should typically be between 1 and 5 dependent on network size/topology |
hypothesisGene |
the name of the hypothesis gene |
signOfHypothesis |
the sign of action expected from the hypothesis, +1 for up regulation, -1 for down |
outputfile |
the file to which the results should be written |
Nodes regulated by hypothesis gene
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