API for CausalR
Causal network analysis methods

Global functions
AddIDsToVertices Man page Source code
AddWeightsToEdges Man page Source code
AnalyseExperimentalData Man page Source code
AnalysePredictionsList Man page Source code
CalculateEnrichmentPValue Man page Source code
CalculateSignificance Man page Source code
CalculateSignificanceUsingCubicAlgorithm Man page Source code
CalculateSignificanceUsingCubicAlgorithm1b Man page Source code
CalculateSignificanceUsingQuarticAlgorithm Man page Source code
CalculateTotalWeightForAllContingencyTables Man page Source code
CalculateWeightGivenValuesInThreeByThreeContingencyTable Man page Source code
CausalR Man page
CausalR-package Man page
CheckPossibleValuesAreValid Man page Source code
CheckRowAndColumnSumValuesAreValid Man page Source code
CompareHypothesis Man page Source code
ComputeFinalDistribution Man page Source code
ComputePValueFromDistributionTable Man page Source code
CreateCCG Man page Source code
CreateCG Man page Source code
CreateNetworkFromTable Man page Source code
DetermineInteractionTypeOfPath Man page Source code
FindApproximateValuesThatWillMaximiseDValue Man page Source code
FindIdsOfConnectedNodesInSubgraph Man page Source code
FindMaximumDValue Man page Source code
GetAllPossibleRoundingCombinations Man page Source code
GetApproximateMaximumDValueFromThreeByTwoContingencyTable Man page Source code
GetApproximateMaximumDValueFromTwoByTwoContingencyTable Man page Source code
GetCombinationsOfCorrectandIncorrectPredictions Man page Source code
GetExplainedNodesOfCCG Man page Source code
GetInteractionInformation Man page Source code
GetMatrixOfCausalRelationships Man page Source code
GetMaxDValueForAFamily Man page Source code
GetMaxDValueForAThreeByTwoFamily Man page Source code
GetMaximumDValueFromTwoByTwoContingencyTable Man page Source code
GetNodeID Man page Source code
GetNodeName Man page Source code
GetNumberOfPositiveAndNegativeEntries Man page Source code
GetPathsInSifFormat Man page Source code
GetRegulatedNodes Man page Source code
GetRowAndColumnSumValues Man page Source code
GetScoreForNumbersOfCorrectandIncorrectPredictions Man page Source code
GetScoresForSingleNode Man page Source code
GetScoresWeightsMatrix Man page Source code
GetScoresWeightsMatrixByCubicAlg Man page Source code
GetSetOfDifferentiallyExpressedGenes Man page Source code
GetSetOfSignificantPredictions Man page Source code
GetShortestPathsFromCCG Man page Source code
GetWeightForNumbersOfCorrectandIncorrectPredictions Man page Source code
GetWeightsAboveHypothesisScoreAndTotalWeights Man page Source code
GetWeightsAboveHypothesisScoreForAThreeByTwoTable Man page Source code
GetWeightsFromInteractionInformation Man page Source code
MakePredictions Man page Source code
MakePredictionsFromCCG Man page Source code
MakePredictionsFromCG Man page Source code
OrderHypotheses Man page Source code
PlotGraphWithNodeNames Man page Source code
PopulateTheThreeByThreeContingencyTable Man page Source code
PopulateTwoByTwoContingencyTable Man page Source code
ProcessExperimentalData Man page Source code
RankTheHypotheses Man page Source code
ReadExperimentalData Man page Source code
ReadSifFileToTable Man page Source code
RemoveIDsNotInExperimentalData Man page Source code
ScoreHypothesis Man page Source code
ValidateFormatOfDataTable Man page Source code
ValidateFormatOfTable Man page Source code
WriteAllExplainedNodesToSifFile Man page Source code
WriteExplainedNodesToSifFile Man page Source code
runRankHypothesis Man page Source code
runSCANR Man page Source code
CausalR documentation built on Nov. 8, 2020, 5:25 p.m.