PopulateTheThreeByThreeContingencyTable: populate the three-by-three contingency table

In CausalR: Causal network analysis methods

Description

Populates 3x3 signed contingency table of expected versus observed changes. Given the values of n++, n+-, n-+ and n–, calculates n0+, n0-, n+0, n-0 and n00. Notation from Chindelevitch et al. Causal reasoning on biological networks Bioinformatics (2012) paper.

Usage

PopulateTheThreeByThreeContingencyTable(n_pp, n_pm, n_mp, n_mm,
  predictionDataStats, experimentalDataStats)

Arguments

n_pp	n++ contingency table entry
n_pm	n+- contingency table entry
n_mp	n-+ contingency table entry
n_mm	n– contingency table entry
predictionDataStats	a prediction data table.
experimentalDataStats	an experimental data table

Value

Vector of calculated values for n0+, n0-, n+0, n-0 and n00 - See: Chindelevitch et al.Bioinformatics (2012).

CausalR documentation built on Nov. 8, 2020, 5:25 p.m.