runRankHypothesis: run rank the hypothesis

In CausalR: Causal network analysis methods

Description

A top level function that used to run CausalR

Usage

runRankHypothesis(PPInet, Expressiondata, delta, correctPredictionsThreshold)

Arguments

PPInet	PPInet is the PPI interaction file
Expressiondata	observed gene expression data
delta	the number of links to follow from any hypothesis no. Dedepending on network size/topology, this value typically ranges between 1 and 5
correctPredictionsThreshold	Minimal score for p-values calculation. Hypotheses with scores below this value will get NAs for p-value and enrichment p-value. The usual default is -inf within the RankTheHypotheses function, where it is employed.

Value

rankedHypothesis table of results produced by the algorithm

CausalR documentation built on Nov. 8, 2020, 5:25 p.m.