dot-embedSamples_def: DEF: Spectral embedding of samples
In CellTrails: Reconstruction, visualization and analysis of branching trajectories

For details see embedSamples

1	.embedSamples_def(x, nbins = 10, sigma = 0.75, design = NULL)

`x`	A numerical matrix
`nbins`	Cubic B-spline discretization is used to compute fuzzy mutual information between pairs of samples; `nbins` defines the number of intervals used for discretization of expression data. (default: 10)
`sigma`	The mutual information matrix is transformed to an adjacency matrix using a heat kernel; `sigma` defines the radius of heat kernel (in quantiles; default: `sigma` = 0.75 which is the third quantile of the mutual information matrix).
`design`	A numeric matrix describing the factors that should be blocked