dot-findStates_def: DEF: Find states

In CellTrails: Reconstruction, visualization and analysis of branching trajectories

Description

For details see findStates

Usage

.findStates_def(
  X,
  ordi,
  link.method = "ward.D2",
  min.size,
  max.pval = 1e-04,
  min.fc = 2,
  min.g = 5,
  reverse = FALSE,
  verbose = FALSE
)

Arguments

X	Expression matrix
ordi	Ordination of samples
link.method	Linkage criteria
min.size	Min size of inital clusters
max.pval	Pval threshold
min.fc	Fold-change threshold
reverse	Reverse order
verbose	For debug
ming.g	Feature cound threshold

Author(s)

Daniel C. Ellwanger

CellTrails documentation built on Nov. 8, 2020, 5:53 p.m.