Description Usage Arguments Value Author(s) See Also Examples
Obtain the peaks near bi-directional promoters. Also output percent of peaks near bi-directional promoters.
1 |
peaks |
peak list, GRanges object |
annoData |
annotation data, annoGR object |
maxgap |
maxgap between peak and TSS |
... |
Not used. |
Output is a list of GRanges object of the peaks near bi-directional promoters.
Jianhong Ou
1 2 3 4 5 6 7 8 | if(interactive() || Sys.getenv("USER")=="jianhongou"){
library(ensembldb)
library(EnsDb.Hsapiens.v75)
data("myPeakList")
annoGR <- annoGR(EnsDb.Hsapiens.v75)
seqlevelsStyle(myPeakList) <- seqlevelsStyle(annoGR)
ChIPpeakAnno:::bdp(myPeakList, annoGR)
}
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