Description Usage Arguments Value Author(s) Examples
estimate the library size of bam files
1 | estLibSize(bamfiles, index = bamfiles, ...)
|
bamfiles |
The file names of the 'BAM' ('SAM' for asBam) files to be processed. |
index |
The names of the index file of the 'BAM' file being processed; this is given without the '.bai' extension. |
... |
Not used. |
numberic vector
Jianhong Ou
1 2 3 4 5 6 7 8 9 | if(interactive() || Sys.getenv("USER")=="jianhongou"){
path <- system.file("extdata", "reads", package="MMDiffBamSubset")
if(file.exists(path)){
WT.AB2 <- file.path(path, "WT_2.bam")
Null.AB2 <- file.path(path, "Null_2.bam")
Resc.AB2 <- file.path(path, "Resc_2.bam")
estLibSize(c(WT.AB2, Null.AB2, Resc.AB2))
}
}
|
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