API for ChIPsim
Simulation of ChIP-seq experiments
| Global functions | |
|---|---|
| ChIPsim | Man page |
| ChIPsim-package | Man page |
| bindDens2readDens | Man page Source code |
| bindLocDens | Man page Source code |
| decodeQuality | Man page Source code |
| defaultControl | Man page Source code |
| defaultErrorProb | Man page Source code |
| defaultFunctions | Man page Source code |
| defaultGenerator | Man page Source code |
| defaultInit | Man page Source code |
| defaultLastFeat | Man page Source code |
| defaultTransition | Man page Source code |
| distDens | Man page Source code |
| encodeQuality | Man page Source code |
| extractQuality | Man page Source code |
| feat2dens | Man page Source code |
| featureDensity | Man page Source code |
| featureDensity.FuzzyFeature | Man page Source code |
| featureDensity.NFRFeature | Man page Source code |
| featureDensity.ReversePhasedFeature | Man page Source code |
| featureDensity.StableFeature | Man page Source code |
| featureDensity.StablePhasedFeature | Man page Source code |
| fragDens | Man page Source code |
| fuzzyFeature | Man page Source code |
| indNuc | Man page Source code |
| joinRegion | Man page Source code |
| makeFeatures | Man page Source code |
| nfrFeature | Man page Source code |
| noNuc | Man page Source code |
| phaseNuc | Man page Source code |
| phasedFeature | Man page Source code |
| placeFeatures | Man page Source code |
| pos2fastq | Man page Source code |
| print.SimulatedExperiment | Source code |
| print.SimulatedFeature | Source code |
| readError | Man page Source code |
| readQualitySample | Man page Source code |
| readSequence | Man page Source code |
| reconcileFeatures | Man page Source code |
| reconcileFeatures.NucleosomePosition | Man page Source code |
| reconcileFeatures.SimulatedExperiment | Man page Source code |
| reconcileFeatures.default | Man page Source code |
| sampleFromFile | Man page Source code |
| sampleReads | Man page Source code |
| simChIP | Man page Source code |
| simpleNames | Man page Source code |
| solexaNames | Man page Source code |
| stableDens | Man page Source code |
| stableFeature | Man page Source code |
| summary.SimulatedExperiment | Source code |
| writeFASTQ | Man page Source code |
| writeIllumina | Man page Source code |
| writeReads | Man page Source code |
