ChromHeatMap: Heat map plotting by genome coordinate

The ChromHeatMap package can be used to plot genome-wide data (e.g. expression, CGH, SNP) along each strand of a given chromosome as a heat map. The generated heat map can be used to interactively identify probes and genes of interest.

Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("ChromHeatMap")
AuthorTim F. Rayner
Bioconductor views Visualization
Date of publicationNone
MaintainerTim F. Rayner <tfrayner@gmail.com>
LicenseArtistic-2.0
Version1.30.0

View on Bioconductor

Functions

ALLs.chr22 Man page
annotation,ChrStrandData-method Man page
chrdata Man page
chrHeatMap Man page
ChrMapPlot Man page
ChrMapPlot-class Man page
chrNames Man page
chrNames,ChrStrandData-method Man page
chrNames,ChrStrandMatrix-method Man page
ChrStrandData Man page
ChrStrandData-class Man page
ChrStrandMatrix Man page
ChrStrandMatrix-class Man page
class:ChrMapPlot Man page
class:ChrStrandData Man page
class:ChrStrandMatrix Man page
createChrMatrix Man page
cytobands Man page
drawMapDendro Man page
exprs,ChrStrandMatrix-method Man page
featureNames,ChrStrandMatrix-method Man page
grabChrMapProbes Man page
makeChrStrandData Man page
makeChrStrandData,ExpressionSet-method Man page
makeChrStrandData,matrix-method Man page
makeChrStrandData-methods Man page
makeRangedDataList Man page
plotChrMap Man page
sampleNames,ChrStrandData-method Man page
sampleNames,ChrStrandMatrix-method Man page
show,ChrMapPlot-method Man page
show,ChrStrandData-method Man page
show,ChrStrandMatrix-method Man page
stains Man page
strandName Man page
strandName,ChrStrandMatrix-method Man page
summary,ChrMapPlot-method Man page
summary,ChrStrandData-method Man page
summary,ChrStrandMatrix-method Man page

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

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