stains: Cytoband display information

In ChromHeatMap: Heat map plotting by genome coordinate

Description

This is a data set describing the display parameters used to plot cytoband data.

Usage

stains

Format

A data frame with one row per cytoband type, and the following columns:

• typeThe cytoband type. This must correspond to the "stain" column in the cytoband data frame (see the cytobands documentation).

• bandcolThe shade of gray used to colour the cytobands. A number between 0 (black) and 1 (white). Passed as the "col" argument to rect.

• textcolThe shade of gray used for the cytoband text labels. A number between 0 (black) and 1 (white). Passed as the "col" argument to text.

• banddensThe shading density to use for the band colour. Passed as the "density" argument to rect.

• bandbordThe shade of gray used for the plotted cytoband borders. A number between 0 (black) and 1 (white). Passed as the "border" argument to rect.

Source

Developed based on the design of the idiogram Bioconductor package

ChromHeatMap documentation built on Nov. 8, 2020, 7:33 p.m.