Man pages for ChromHeatMap
Heat map plotting by genome coordinate
| ALLs.chr22 | Chromosome 22 subset of ALL data for ALL1/AF4 and E2A/PBX1 |
| chrdata | The ALLs.chr22 ExpressionSet, reformatted as a ChrStrandData... |
| chrHeatMap | Plot ChrStrandMatrix objects as heat maps along a chromosome |
| ChrMapPlot-class | Class containing a mapping between plot location and probe or... |
| chrNames | Retrieve chromosome names from an object. |
| ChrStrandData-class | Class to contain data associated with chromosome coordinates... |
| ChrStrandMatrix-class | Class to contain data associated with genome locations for a... |
| createChrMatrix | Generate chromosome-based subset matrices from the mapped... |
| cytobands | Cytoband location information |
| drawMapDendro | Draw a heatmap and dendrogram for a strand-specific data... |
| grabChrMapProbes | Identify the probes or genes plotted using plotChrMap |
| makeChrStrandData | Map a data matrix onto chromosome coordinates |
| makeChrStrandData-methods | Map a data matrix onto chromosome coordinates |
| makeRangedDataList | Plot expression data as tracks in the UCSC genome browser |
| plotChrMap | Plot data as an annotated heat map along a chromosome |
| stains | Cytoband display information |
| strandName | Retrieve strand information from a ChrStrandMatrix object. |
