API for ClusterSignificance
The ClusterSignificance package provides tools to assess if class clusters in dimensionality reduced data representations have a separation different from permuted data
| Global functions | |
|---|---|
| .AUC | Source code |
| .AUC.calc | Source code |
| .ClassifiedPoints | Man page |
| .Curve | Source code |
| .Mlp | Man page |
| .MlpPlotStep1 | Source code |
| .MlpPlotStep2 | Source code |
| .MlpPlotStep3 | Source code |
| .MlpPlotStep4 | Source code |
| .MlpPlotStep5 | Source code |
| .MlpPlotStep6 | Source code |
| .Pcp | Man page |
| .Pcp2DPlotStep1 | Source code |
| .Pcp2DPlotStep2 | Source code |
| .Pcp2DPlotStep3 | Source code |
| .Pcp2DPlotStep4 | Source code |
| .Pcp2DPlotStep5 | Source code |
| .Pcp2DPlotStep6 | Source code |
| .PermutationResults | Man page |
| .ROCdistance | Source code |
| .TpFpFnTn | Source code |
| .axisIntercept2D | Source code |
| .calculateCI | Source code |
| .calculateP | Source code |
| .classifyWrapper | Source code |
| .codedMatrix | Source code |
| .combinedFunction | Source code |
| .distMeanPointsToLineLineTo2D3D | Source code |
| .groupAndDimensionMean | Source code |
| .inputChecks | Source code |
| .legend | Source code |
| .movePointsSoMeanLineGoesThroughOrigo2D | Source code |
| .newScores | Source code |
| .normalizeMatrix | Source code Source code |
| .permMatrix | Source code |
| .plotPcp2D | Source code |
| .plots | Source code |
| .projectMultidimensionalPointsOnMultidimensionalLine | Source code |
| .reduceMultDimToOneDimAlongTheLine | Source code |
| .regressionVectorFromGroupMeans | Source code |
| .scorePermats | Source code |
| .scoreReal | Source code |
| .sensitivity | Source code |
| .setColors | Source code |
| .showClassifiedPoints | Source code |
| .showMlp | Source code |
| .showPcp | Source code |
| .showPermutationResults | Source code |
| .specificity | Source code |
| .step1 | Source code |
| .step2 | Source code |
| .step3 | Source code |
| .step4 | Source code |
| .step5 | Source code |
| .step6 | Source code |
| .upperTriangle | Source code |
| .user.permutationsCheck | Source code |
| .vectorMatrixOrthogonalToMeanPointLine2D | Source code |
| ClassifiedPoints | Man page |
| ClassifiedPoints-class | Man page |
| ClusterSignificance | Man page |
| ClusterSignificance-package | Man page |
| Mlp | Man page |
| Mlp-class | Man page |
| Pcp | Man page |
| Pcp-class | Man page |
| PermutationResults-class | Man page |
| c,PermutationResults-method | Man page |
| classify | Man page Man page |
| classify,Mlp-method | Man page Man page |
| classify,Pcp-method | Man page Man page |
| conf.int | Man page |
| conf.int,PermutationResults-method | Man page |
| getData | Man page |
| getData,ClassifiedPoints-method | Man page |
| getData,Mlp-method | Man page |
| getData,Pcp-method | Man page |
| getData,PermutationResults-method | Man page |
| initialize,ClassifiedPoints-method | Man page |
| initialize,Mlp-method | Man page |
| initialize,Pcp-method | Man page |
| initialize,PermutationResults-method | Man page |
| mlp | Man page Man page |
| mlp,matrix-method | Man page Man page |
| mlpMatrix | Man page |
| pcp | Man page Man page |
| pcp,matrix-method | Man page Man page |
| pcpMatrix | Man page |
| permute | Man page Man page |
| permute,matrix-method | Man page Man page |
| plot,ClassifiedPoints,missing-method | Man page |
| plot,Mlp,missing-method | Man page |
| plot,Pcp,missing-method | Man page |
| plot,PermutationResults,missing-method | Man page |
| pvalue | Man page |
| pvalue,PermutationResults-method | Man page |
| show,ClassifiedPoints-method | Man page |
| show,Mlp-method | Man page |
| show,Pcp-method | Man page |
| show,PermutationResults-method | Man page |
