ClusterSignificance: The ClusterSignificance package provides tools to assess if clusters have a separation different from random or permuted data

The ClusterSignificance package provides tools to assess if clusters have a separation different from random or permuted data. ClusterSignificance investigates clusters of two or more groups by first, projecting all points onto a one dimensional line. Cluster separations are then scored and the probability of the seen separation being due to chance is evaluated using a permutation method.

AuthorJason T. Serviss and Jesper R. Gadin
Date of publicationNone
MaintainerJason T Serviss <jason.serviss@ki.se>
LicenseGPL-3
Version1.2.2

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Files in this package

ClusterSignificance/.travis.yml
ClusterSignificance/DESCRIPTION
ClusterSignificance/NAMESPACE
ClusterSignificance/NEWS
ClusterSignificance/R
ClusterSignificance/R/All-classes.R ClusterSignificance/R/ClusterSignificance-package.R ClusterSignificance/R/classifier-methods.R ClusterSignificance/R/initialize-methods.R ClusterSignificance/R/mlpMatrix.R ClusterSignificance/R/pcpMatrix.R ClusterSignificance/R/permutation-methods.R ClusterSignificance/R/plot-methods.R ClusterSignificance/R/projection-methods.R ClusterSignificance/R/show-methods.R
ClusterSignificance/README.md
ClusterSignificance/build
ClusterSignificance/build/vignette.rds
ClusterSignificance/data
ClusterSignificance/data/mlpMatrix.rda
ClusterSignificance/data/pcpMatrix.rda
ClusterSignificance/inst
ClusterSignificance/inst/data-raw
ClusterSignificance/inst/data-raw/demoData.R
ClusterSignificance/inst/doc
ClusterSignificance/inst/doc/ClusterSignificance-vignette.R
ClusterSignificance/inst/doc/ClusterSignificance-vignette.Rmd
ClusterSignificance/inst/doc/ClusterSignificance-vignette.html
ClusterSignificance/man
ClusterSignificance/man/ClusterSignificance-package.Rd ClusterSignificance/man/classify.Rd ClusterSignificance/man/mlp.Rd ClusterSignificance/man/mlpMatrix.Rd ClusterSignificance/man/pcp.Rd ClusterSignificance/man/pcpMatrix.Rd ClusterSignificance/man/permute.Rd
ClusterSignificance/tests
ClusterSignificance/tests/testthat
ClusterSignificance/tests/testthat.R
ClusterSignificance/tests/testthat/test_classifier-methods.R
ClusterSignificance/tests/testthat/test_permutation-methods.R
ClusterSignificance/tests/testthat/test_plot-methods.R
ClusterSignificance/tests/testthat/test_projection-methods.R
ClusterSignificance/vignettes
ClusterSignificance/vignettes/ClusterSignificance-vignette.Rmd

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