Global functions | |
---|---|
CoGAPS | Man page Source code |
CoGAPS-package | Man page |
CogapsParams | Man page Source code |
CogapsParams-class | Man page |
CogapsResult-class | Man page |
GIST.data_frame | Man page |
GIST.matrix | Man page |
GIST.result | Man page |
GIST.uncertainty | Man page |
GWCoGAPS | Man page Source code |
binaryA | Man page |
binaryA,CogapsResult-method | Man page |
buildReport | Man page Source code |
calcCoGAPSStat | Man page |
calcCoGAPSStat,CogapsResult-method | Man page |
calcGeneGSStat | Man page |
calcGeneGSStat,CogapsResult-method | Man page |
calcZ | Man page |
calcZ,CogapsResult-method | Man page |
callInternalCoGAPS | Man page Source code |
checkDataMatrix | Man page Source code |
checkInputs | Man page Source code |
checkpointsEnabled | Man page Source code |
checkpointsEnabled_cpp | Source code |
cogaps_cpp | Source code |
cogaps_from_file_cpp | Source code |
compiledWithOpenMPSupport | Man page Source code |
compiledWithOpenMPSupport_cpp | Source code |
computeGeneGSProb | Man page |
computeGeneGSProb,CogapsResult-method | Man page |
convertDataToMatrix | Man page Source code |
corcut | Man page Source code |
corrToMeanPattern | Man page Source code |
createCogapsResult | Man page Source code |
createSets | Man page Source code |
distributedCogaps | Man page Source code |
findConsensusMatrix | Man page Source code |
gapsCat | Man page Source code |
getAmplitudeMatrix | Man page |
getAmplitudeMatrix,CogapsResult-method | Man page |
getBuildReport_cpp | Source code |
getClusteredPatterns | Man page |
getClusteredPatterns,CogapsResult-method | Man page |
getCorrelationToMeanPattern | Man page |
getCorrelationToMeanPattern,CogapsResult-method | Man page |
getDimNames | Man page Source code |
getFeatureLoadings | Man page |
getFeatureLoadings,CogapsResult-method | Man page |
getFileInfo_cpp | Source code |
getGeneNames | Man page Source code |
getMeanChiSq | Man page |
getMeanChiSq,CogapsResult-method | Man page |
getOriginalParameters | Man page |
getOriginalParameters,CogapsResult-method | Man page |
getParam | Man page |
getParam,CogapsParams-method | Man page |
getPatternMatrix | Man page |
getPatternMatrix,CogapsResult-method | Man page |
getRetinaSubset | Man page Source code |
getSampleFactors | Man page |
getSampleFactors,CogapsResult-method | Man page |
getSampleNames | Man page Source code |
getSubsets | Man page |
getSubsets,CogapsResult-method | Man page |
getUnmatchedPatterns | Man page |
getUnmatchedPatterns,CogapsResult-method | Man page |
getValueOrRds | Man page Source code |
getVersion | Man page |
getVersion,CogapsResult-method | Man page |
initialize,CogapsParams-method | Man page |
initialize,CogapsResult-method | Man page |
isRdsFile | Man page Source code |
ncolHelper | Man page Source code |
nrowHelper | Man page Source code |
parseExtraParams | Man page Source code |
patternMarkers | Man page |
patternMarkers,CogapsResult-method | Man page |
patternMatch | Man page Source code |
plot.CogapsResult | Source code |
plotPatternMarkers | Man page Source code |
plotResiduals | Man page |
plotResiduals,CogapsResult-method | Man page |
reconstructGene | Man page |
reconstructGene,CogapsResult-method | Man page |
run_catch_unit_tests | Source code |
sampleUniformly | Man page Source code |
sampleWithAnnotationWeights | Man page Source code |
sampleWithExplictSets | Man page Source code |
scCoGAPS | Man page Source code |
setAnnotationWeights | Man page |
setAnnotationWeights,CogapsParams-method | Man page |
setDistributedParams | Man page |
setDistributedParams,CogapsParams-method | Man page |
setFixedPatterns | Man page |
setFixedPatterns,CogapsParams-method | Man page |
setParam | Man page |
setParam,CogapsParams-method | Man page |
startupMessage | Man page Source code |
stitchTogether | Man page Source code |
supported | Man page Source code |
unitVector | Source code |
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