API for CoRegNet
CoRegNet : reconstruction and integrated analysis of co-regulatory networks
| Global functions | |
|---|---|
| .adaptiveCoregSupport | Source code |
| .addOneCoRegulatoryEvidence | Source code |
| .addOneRegulatoryEvidence | Source code |
| .addRegulationEvidence | Source code |
| .addRegulatorCooperativityEvidence | Source code |
| .descriptionUpdate | Source code |
| .distfun | Source code |
| .fitGRN | Source code |
| .getEntry | Source code |
| .hclustfun | Source code |
| .heatplot | Source code |
| .invlist | Source code |
| .netintersect | Source code |
| .parallelRegulationEvidence | Source code |
| .parallelRegulatorCooperativityEvidence | Source code |
| .quicknonuniqgrnsTOSIGRNS | Source code |
| .regulationEvidence | Source code |
| .regulatorCooperativityEvidence | Source code |
| .subsigrns | Source code |
| .tfPlot | Source code |
| .traits | Source code |
| .uniqueEvidenceDataFrameByPvalue | Source code |
| .val2col | Source code |
| CHEA_sub | Man page |
| CIT_BLCA_CNV | Man page |
| CIT_BLCA_EXP | Man page |
| CIT_BLCA_Subgroup | Man page |
| ENCODE_sub | Man page |
| HIPPIE_sub | Man page |
| HumanTF | Man page |
| HumanTF_entrezgene | Man page |
| STRING_sub | Man page |
| activators | Man page |
| activators,coregnet-method | Man page |
| addCooperativeEvidences | Man page |
| addCooperativeEvidences,coregnet-method | Man page |
| addEvidences | Man page |
| addEvidences,coregnet-method | Man page |
| as.data.frame,coregnet-method | Man page |
| as.list,coregnet-method | Man page |
| automaticParameters | Source code |
| coRegnet | Man page |
| coRegnet-package | Man page |
| coerce,coregnet-method | Man page |
| coerce,coregnet-method,data.frame | Man page |
| coerce,coregnet-method,list | Man page |
| coregnet | Man page Source code |
| coregnet-class | Man page |
| coregnetToDataframe | Man page |
| coregnetToDataframe,coregnet-method | Man page |
| coregnetToList | Man page |
| coregnetToList,coregnet-method | Man page |
| coregnetToList.CoRegNet | Man page |
| coregnetToList.coregnet | Man page |
| coregulators | Man page |
| coregulators,coregnet-method | Man page |
| dim,coregnet-method | Man page |
| directedNetworkEnrichment | Source code |
| discretizeExpressionData | Man page Source code |
| display | Man page Source code |
| eand | Source code |
| fishersMethod | Source code |
| hLICORN | Man page Source code |
| legendPlot | Source code |
| length,coregnet-method | Man page |
| list.enriched | Source code |
| masterRegulator | Man page Source code |
| masterRegulator,coregnet-method | Man page |
| meanSupport | Source code |
| merge.pvalues | Source code |
| networkLegendPlot | Source code |
| oneGeneHLICORN | Source code |
| print,coregnet-method | Man page |
| printNetwork | Source code |
| reactiveAdjacencyMatrix | Source code |
| redoLayout | Source code |
| refine | Man page |
| refine,coregnet-method | Man page |
| regulatorInfluence | Man page |
| regulatorInfluence,coregnet-method | Man page |
| regulators | Man page |
| regulators,coregnet-method | Man page |
| repressors | Man page |
| repressors,coregnet-method | Man page |
| selectNode | Source code |
| set.overlap | Source code |
| show,coregnet-method | Man page |
| summary | Man page |
| summary,coregnet-method | Man page |
| targets | Man page |
| targets,coregnet-method | Man page |
| testCyto | Source code |
| undirectedNetworkEnrichment | Source code |
| updateData | Source code |
