Description Usage Arguments Examples
This function accepts two functional annotation charts as input, performs a comparison on them using compareZscores() and plots a DAG based on the results. The saturation of each node is computed based on the Pvalue, such that the more significant values are darker in colour.
1 2 | plotZRankedDAG(setA, setB, ont = "BP", n = 100, maxLabel = NULL,
fullNames = TRUE, Pvalues = TRUE)
|
setA |
FunctionalAnnotationChart to compare |
setB |
FunctionalAnnotationChart to compare |
ont |
The gene ontology category for which to calculate enrichment |
n |
The number of top-ranked Pvalues to compare |
maxLabel |
The maximum number of characters in a node's label |
fullNames |
Whether to print the full GO term label or just the GO id |
Pvalues |
Whether to print P-values alongside each label |
1 2 3 4 5 6 | ## Not run:
data(funChart1)
data(funChart2)
plotZRankedDAG(funChart1, funChart2, n = 50)
## End(Not run)
|
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