CountClust: Clustering and Visualizing RNA-Seq Expression Data using Grade of Membership Models

Fits grade of membership models (GoM, also known as admixture models) to cluster RNA-seq gene expression count data, identifies characteristic genes driving cluster memberships, and provides a visual summary of the cluster memberships.

Package details

AuthorKushal Dey [aut, cre], Joyce Hsiao [aut], Matthew Stephens [aut]
Bioconductor views Clustering GeneExpression ImmunoOncology RNASeq Sequencing Software StatisticalMethod Visualization
MaintainerKushal Dey <kkdey@uchicago.edu>
LicenseGPL (>= 2)
Version1.18.0
URL https://github.com/kkdey/CountClust
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("CountClust")

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CountClust documentation built on Nov. 8, 2020, 5:01 p.m.