Files in CountClust

Clustering and Visualizing RNA-Seq Expression Data using Grade of Membership Models

README.md

NEWS

NAMESPACE

DESCRIPTION

build/vignette.rds

data/GTExV6Brain.FitGoM.rda

data/datalist

data/MouseDeng2014.FitGoM.rda

data/MouseJaitinSpleen.FitGoM.rda

data/AbundanceGoM.rda

data/ex.counts.rda

R/compGoM.R R/FitGoM.R R/ExtractTopFeatures.R R/nullmodel_GoM.R R/compare_omega.R R/handleNA.R R/RemoveSparseFeatures.R R/data.R R/BatchCorrectedCounts.R R/ExtractHighCorFeatures.R R/StructureGGplot.R vignettes/count-clust.Rmd

vignettes/countclust.bib

vignettes/compgom_test.R

vignettes/structure_plot.png

vignettes/figures/plot_topic_deng-1.png

vignettes/figures/gtex_annot-1.png

vignettes/figures/plot_topic_2-1.png

vignettes/figures/plot_topic-1.png

vignettes/figures/plot_topic_gtex-1.png

man/StructureGGplot.Rd man/compare_omega.Rd man/BatchCorrectedCounts.Rd man/GTExV6Brain.FitGoM.Rd man/ExtractTopFeatures.Rd man/MouseDeng2014.FitGoM.Rd man/ExtractHighCorFeatures.Rd man/handleNA.Rd man/MouseJaitinSpleen.FitGoM.Rd man/FitGoM.Rd man/compGoM.Rd man/ex.counts.Rd man/AbundanceGoM.Rd man/nullmodel_GoM.Rd man/RemoveSparseFeatures.Rd

inst/CITATION

inst/doc/count-clust.Rmd

inst/doc/count-clust.html

inst/doc/count-clust.R

CountClust documentation built on Nov. 8, 2020, 5:01 p.m.