R/data.R

In CountClust: Clustering and Visualizing RNA-Seq Expression Data using Grade of Membership Models

#' GoM model fit for Deng et al 2014 single cell RNA-seq data on mouse
#' @format A list of GoM model output for 6 clusters (k=2:7)
#' @return A list of GoM model output for 6 clusters (k=2:7)
"MouseDeng2014.FitGoM"

#' GoM model fit for Jaitin et al 2014 single cell RNA-seq data on mouse
#' @format A list of GoM model output for k=7
#' @return A list of GoM model output for k=7
"MouseJaitinSpleen.FitGoM"

#' GoM model fit for GTEx V6 Brain bulk-RNA data
#' @format A list of GoM model output for k=7
#' @return A list of GoM model output for k=7
"GTExV6Brain.FitGoM"

#' GoM model fit for abundance data
#' @format A list of GoM model output
#' @return A list of GoM model output
"AbundanceGoM"


#' counts data for GTEx V6 Brain data for 200 genes
#' @format A data frame 1259 by 200 in dimensions
#' @return A data frame 1259 by 200 in dimensions
"ex.counts"