Description Usage Arguments Details Value Examples
This function handles the NA values in the count data. If for a feature, the proportion of NAs is greater than threshold proportion, then we remove the feature, otherwise we use MAR substitution scheme using the distribution of the non NA values for the feature. If threshold proportion is 0, it implies removal of all features with NA values. Default value of threshold proportion is 0.
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data |
count data in a sample by feature matrix. |
thresh_prop |
threshold proportion of NAs for removal of feature or replacing the NA values. |
This function removes NAs from the counts data
Returns a list with
data |
The modified data with NA substitution and removal |
na_removed_cols |
The columns in the data with NAs that were removed |
na_sub_cols |
The columns in the data with NAs that were substituted |
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