Man pages for CytoML
A GatingML Interface for Cross Platform Cytometry Data Sharing
| addCustomInfo | add customInfo nodes to each gate node and add... |
| ce_get_compensations | Obtain the spillover matrices for the samples in a Cytobank... |
| ce_get_panels | Obtain counts of the number of samples associated with each... |
| ce_get_samples | Obtain a mapping between the samples and marker panels in a... |
| ce_get_transformations | Obtain the transformations associated with each channel in a... |
| compensate-GatingSet-graphGML-method | compensate a GatingSet based on the compensation information... |
| constructTree | Reconstruct the population tree from the GateSets |
| cytobank_experiment-methods | Methods for interacting with cytobank_experiment objects |
| cytobank_to_gatingset | A wrapper that parses the gatingML and FCS files (or... |
| CytoML-deprecated | Deprecated functions in package 'CytoML'. |
| CytoML.par.get | CytoML.par.set sets a set of parameters in the CytoML package... |
| CytoML.par.init | workspace version is parsed from xml node... |
| diva_get_samples | Get a table of samples from a FACSDiva workspace |
| diva_to_gatingset | Parse a FACSDiva Workspace |
| diva_workspace-class | An R representation of a BD FACSDiva workspace |
| extend | extend the gate to the minimum and maximum limit of both... |
| fj_ws_get_keywords | Get Keywords |
| fj_ws_get_sample_groups | Get a table of sample groups from a flowJo workspace |
| fj_ws_get_samples | Get a list of samples from a flowJo workspace |
| flowjo_to_gatingset | Parse a flowJo Workspace |
| flowjo_workspace-class | An R representation of a flowJo workspace. |
| gatingset_to_cytobank | Convert a GatingSet to a Cytobank-compatible gatingML |
| gatingset_to_flowjo | Convert a GatingSet to flowJo workspace |
| getChildren-graphGML-character-method | get children nodes |
| getCompensationMatrices.graphGML | Extract compensation from graphGML object. |
| getGate-graphGML-character-method | get gate from the node |
| getNodes-graphGML-method | get nodes from graphGML object |
| getParent-graphGML-character-method | get parent nodes |
| getTransformations.graphGML | Extract transformations from graphGML object. |
| graphGML-class | A graph object returned by 'read.gatingML.cytobank' function. |
| gs_compare_cytobank_counts | compare the counts to cytobank's exported csv so that the... |
| matchPath | Given the leaf node, try to find out if a collection of nodes... |
| open_cytobank_experiment | Construct a 'cytobank_experiment' object from ACS file |
| open_diva_xml | open Diva xml workspace |
| open_flowjo_xml | Open/Close a flowJo workspace |
| parse.gateInfo | Parse the cytobank custom_info for each gate |
| plot-graphGML-missing-method | plot the population tree stored in graphGML. |
| range.GatingHierarchy | the parameter range from the flow data associated with... |
| read.gatingML.cytobank | Parser for gatingML exported by Cytobank |
| show-graphGML-method | show method for graphGML |
