splitReads: Divide read names by allele
In DAMEfinder: Finds DAMEs - Differential Allelicly MEthylated regions
Description
Usage
Arguments
Value
Description
Takes a GenomicAlignments object and returns a list of read names dividied by
allele.
Usage
1
splitReads(alns, v, snp)
Arguments
alns
GenomicAlignments object.
v
Nucleotide of reference (or alternative) allele.
snp
GRanges object containing SNP location.
Value
A named list of vectors, each vector containing read names for each
allele.
DAMEfinder documentation built on Nov. 8, 2020, 11:10 p.m.
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Description Usage Arguments Value
Description
Takes a GenomicAlignments object and returns a list of read names dividied by allele.
Usage
1 | splitReads(alns, v, snp)
|
Arguments
alns |
GenomicAlignments object. |
v |
Nucleotide of reference (or alternative) allele. |
snp |
GRanges object containing SNP location. |
Value
A named list of vectors, each vector containing read names for each allele.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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