Man pages for DEDS
Differential Expression via Distance Summary for Microarray Data
| affySpikeIn | Gene expression dataset from Affymetrix Spike-in Experiments |
| aggregateFun | Aggregate Statistical Functions for DEDS |
| ApoA1 | Gene expression dataset from the ApoA1 Experiment |
| comp.adjp | Computing permutation based step-down maxT adjusted p values... |
| comp.B | Computing B-statistics for Differential Expression |
| comp.ebayes | Computing Empirical Bayes Statistics for Differential... |
| comp.F | Computing F-statistic for Differential Expression |
| comp.FC | Computing Fold Change for Differential Expression |
| comp.fdr | Computing permutation based q values controlling false... |
| comp.modF | Computing Moderated t-statistics for Differential Expression |
| comp.modt | Computing Moderated t-statistics for Differential Expression |
| comp.SAM | Computing SAM Statistics for Differential Expression |
| comp.stat | Computing Test Statistics for Differential Expression |
| comp.t | Computing One and Two Sample t-statistic for Differential... |
| comp.unadjp | Computing permutation based unadjusted p values for each row... |
| deds.chooseTest | Selection of the Most Common Statistics for Differential... |
| deds.class | DEDS Result List - class |
| deds.genExtra | Generating Extra Parameters for Test Statistics Functions for... |
| DEDS-internal | Internal DEDS functions |
| deds.pval | Differential Expression via Distance Summary of p Values from... |
| deds.stat | Differential Expression via Distance Summary of Multiple... |
| deds.stat.linkC | Differentail Expression via Distance Summary of Multiple... |
| hist.DEDS | Histogram for DEDS Objects |
| pairs.DEDS | Pairs Plot for DEDS Objects |
| qqnorm.DEDS | Normal Q-Q Plot for DEDS Objects |
| topgenes | Table of Top Genes from DEDS |
