DEDS-internal: Internal DEDS functions

In DEDS: Differential Expression via Distance Summary for Microarray Data

Description

Internal DEDS functions

Usage

deds.checkB(classlabel, B, verbose = TRUE)
deds.checkothers(tail = "abs", distance = "weuclid", adj = "fdr")
deds.checkclasslabel(classlabel, tests)
deds.checkX(X, classlabel, tests, nsig = nrow(X), B)
test.checkX(X, classlabel, test)
deds.calcFDR(bD, D, R, K = length(D))
deds.calcAdjP(bD, D, R, K = length(D))
deds.next.sample(L)
type2test(tail = c("abs", "higher", "lower"), distance = c("weuclid",
"euclid"), adj = c("fdr", "adjp"), L)
sam.fdr(order.t, ordertB, deltas)
sam.multiclass.func(X, L, prob = 0.5, B = 200, stat.only = TRUE,
verbose = FALSE, s.step=0.01, alpha.step=0.01, plot.it=FALSE)
sam.twoclass.func(X, L, prob = 0.5, B = 200, stat.only = TRUE,
verbose = FALSE, s.step=0.01, alpha.step=0.01, plot.it=FALSE)
sam.oneclass.func(X, L, prob = 0.5, B = 200, stat.only = TRUE,
verbose = FALSE, s.step=0.01, alpha.step=0.01, plot.it=FALSE)
sam.s0(r, s, s.step = 0.01, alpha.step = 0.01, plot.it = FALSE)
euclidean(X, center, wval)

Details

These are not to be called directly by the user.

DEDS documentation built on Oct. 31, 2019, 3:15 a.m.