API for DEsubs
DEsubs: an R package for flexible identification of differentially expressed subpathways using RNA-seq expression experiments
| Global functions | |
|---|---|
| .DEanalysis | Source code |
| .annotationMap | Source code |
| .changeAnnotation | Source code |
| .constructNetwork | Source code |
| .dir.create.rec | Source code |
| .doCirclize | Source code |
| .fillMatrixList | Source code |
| .getDefaultReferences | Source code |
| .getExternalMeasures | Source code |
| .getFunctionalMeasures | Source code |
| .getFunctionalNodes | Source code |
| .getLengths | Source code |
| .getTopologicalHandlers | Source code |
| .identifyNomenclature | Source code |
| .loadTermData | Source code |
| .matrixVisualization | Source code |
| .onAttach | Source code |
| .onLoad | Source code |
| .onUnload | Source code |
| .ontologicalMeasures | Source code |
| .organismVisualization | Source code |
| .pruneEdges | Source code |
| .pruneNetwork | Source code |
| .subLevelMeasures | Source code |
| .subpathwayAnalysis | Source code |
| .subpathwayTypes | Source code |
| .subpathwayVisualization | Source code |
| .topologicalMeasures | Source code |
| .unlistToMatrix | Source code |
| .visMatrix.barplot | Source code |
| .visMatrix.dotplot | Source code |
| .visMatrix.heatmap | Source code |
| DEsubs | Man page Source code |
| TSPM | Source code |
| geneVisualization | Man page |
| organismVisualization | Man page Source code |
| subpathwayToGraph | Man page Source code |
| subpathwayTypes | Man page Source code |
| subpathwayVisualization | Man page Source code |
