API for DEsubs
DEsubs: an R package for flexible identification of differentially expressed subpathways using RNA-seq expression experiments

Global functions
DEanalysis Source code
DEsubs Man page Source code
TSPM Source code
changeAnnotation Source code
constructNetwork Source code
dir.create.rec Source code
doCirclize Source code
fillMatrixList Source code
geneVisualization Man page Source code
getDefaultReferences Source code
getExternalMeasures Source code
getFunctionalMeasures Source code
getFunctionalNodes Source code
getLengths Source code
getTopologicalHandlers Source code
loadTermData Source code
matrixVisualization Source code
measureToNodes Source code
onAttach Source code
onLoad Source code
onUnload Source code
ontologicalMeasures Source code
organismVisualization Man page Source code Source code
pruneEdges Source code
pruneNetwork Source code
subLevelMeasures Source code
subpathwayAnalysis Source code
subpathwayToGraph Man page Source code
subpathwayTypes Man page Source code Source code
subpathwayVisualization Man page Source code Source code
topologicalMeasures Source code
unlistToMatrix Source code
visMatrix.barplot Source code
visMatrix.dotplot Source code
visMatrix.heatmap Source code
DEsubs documentation built on Nov. 17, 2017, 9:04 a.m.