Files in DEsubs
DEsubs: an R package for flexible identification of differentially expressed subpathways using RNA-seq expression experiments

DESCRIPTION
NAMESPACE
R
R/DEmeasures.R R/DEsubs.R R/TSPM.R R/networkConstruction.R R/subpathwayAnalysis.R R/utilities.R R/visualizations.R R/zzz.R
build
build/vignette.rds
inst
inst/CITATION
inst/NEWS
inst/doc
inst/doc/DEsubs.R inst/doc/DEsubs.Rmd inst/doc/DEsubs.pdf
inst/extdata
inst/extdata/Data
inst/extdata/Data/Disease_GAD.RData
inst/extdata/Data/Disease_OMIM.RData
inst/extdata/Data/Drug_DrugBank.RData
inst/extdata/Data/GO_bp.RData
inst/extdata/Data/GO_cc.RData
inst/extdata/Data/GO_mf.RData
inst/extdata/Data/KEGG.RData
inst/extdata/Data/TF.RData
inst/extdata/Data/edgeLists.RData
inst/extdata/Data/libraryEntrezToExternalNomenclature.RData
inst/extdata/Data/libraryEntrezToHGNC.RData
inst/extdata/Data/miRNA.RData
inst/extdata/User
inst/extdata/User/toyData.txt
inst/extdata/data.RData
inst/unitTests
inst/unitTests/test_DEsubs.R inst/unitTests/test_geneVisualization.R inst/unitTests/test_organismVisualization.R inst/unitTests/test_subpathwayToGraph.R inst/unitTests/test_subpathwayVisualization.R
man
man/DEsubs.Rd man/geneVisualization.Rd man/organismVisualization.Rd man/subpathwayToGraph.Rd man/subpathwayTypes.Rd man/subpathwayVisualization.Rd
tests
tests/runTests.R
vignettes
vignettes/DEsubs.Rmd
vignettes/citations.bib
vignettes/figures
vignettes/figures/fig1.png
vignettes/figures/fig2.png
vignettes/figures/fig3.png
DEsubs documentation built on July 25, 2017, 2 a.m.