Files in DEsubs

DEsubs: an R package for flexible identification of differentially expressed subpathways using RNA-seq expression experiments

NAMESPACE

DESCRIPTION

build/vignette.rds

R/networkConstruction.R R/visualizations.R R/DEsubs.R R/utilities.R R/TSPM.R R/subpathwayAnalysis.R R/zzz.R R/DEmeasures.R

vignettes/citations.bib

vignettes/DEsubs.Rmd

vignettes/figures/fig2.png

vignettes/figures/fig3.png

vignettes/figures/fig1.png

man/subpathwayToGraph.Rd man/organismVisualization.Rd man/subpathwayTypes.Rd man/DEsubs.Rd man/geneVisualization.Rd man/subpathwayVisualization.Rd tests/runTests.R

inst/NEWS

inst/CITATION

inst/doc/DEsubs.R inst/doc/DEsubs.Rmd inst/doc/DEsubs.pdf

inst/extdata/data.RData

inst/extdata/Data/Drug_DrugBank.RData

inst/extdata/Data/GO_mf.RData

inst/extdata/Data/GO_cc.RData

inst/extdata/Data/KEGG.RData

inst/extdata/Data/libraryEntrezToExternalNomenclature.RData

inst/extdata/Data/TF.RData

inst/extdata/Data/libraryEntrezToHGNC.RData

inst/extdata/Data/edgeLists.RData

inst/extdata/Data/Disease_OMIM.RData

inst/extdata/Data/miRNA.RData

inst/extdata/Data/GO_bp.RData

inst/extdata/Data/Disease_GAD.RData

inst/extdata/User/toyData.txt

inst/unitTests/test_organismVisualization.R inst/unitTests/test_DEsubs.R inst/unitTests/test_subpathwayToGraph.R inst/unitTests/test_geneVisualization.R inst/unitTests/test_subpathwayVisualization.R

DEsubs documentation built on Nov. 8, 2020, 8:31 p.m.