README.md

In DepecheR: Determination of essential phenotypic elements of clusters in high-dimensional entities

DepecheR is now on Bioconductor! Please go to https://bioconductor.org/packages/release/bioc/html/DepecheR.html to get access to vinjettes, and to install the latest release or development versions.

DepecheR is an R package for clustering cytometry and single-cell RNA sequencing data according to a minimal set of biological markers. This is done using repeated application of a penalized k-means algorithm, which penalizes partitions that depend on a large number of markers. DepecheR tunes the level of penalization by testing a range of penalization levels, thus minimizing the need for assumptions and arbitrary decisions. DepecheR however also contains a function suite for statistical interpretation of group differences, and for visualization of said group differences, in addition to population densities, marker expressions, et cetera.

DepecheR documentation built on Nov. 8, 2020, 5:44 p.m.