Files in DiscoRhythm

Interactive Workflow for Discovering Rhythmicity in Biological Data

README.md R/utils.R R/dataInput.R R/trigOperations.R R/ODAchecks.R R/QC.R R/stats.R R/colors.R R/parseMeta.R R/data.R R/pkgname.R R/disco.R vignettes/disco_workflow_vignette.Rmd man/discoColors.Rd man/discoPCAgetOutliers.Rd man/discoODAs.Rd man/discoODAid2name.Rd man/discoPCA.Rd man/discoDesignSummary.Rd man/checkJTKperiod.Rd man/fisherExact.Rd man/discoPeriodDetection.Rd man/discoShinyHandler.Rd man/checkPeriod.Rd man/discoDFtoSE.Rd man/sincos.Rd man/lmCSmat.Rd man/DiscoRhythm-package.Rd man/theme_disco.Rd man/discoApp.Rd man/discoODAexclusionMatrix.Rd man/discoCheckInput.Rd man/lmCSmatNoNA.Rd man/discoParseMeta.Rd man/discoQC.Rd man/inferFilteredDesign.Rd man/discoBatch.Rd man/discoGetSimu.Rd man/PeriodDetection_range.Rd tests/testthat.R tests/testthat/test-run-discoBatch.R inst/DiscoRhythm_report.Rmd inst/DiscoRhythm_batch.R inst/doc/disco_workflow_vignette.Rmd inst/doc/disco_workflow_vignette.R inst/scripts/generateSimulatedData.R inst/app/app.R inst/app/code/server/filtCorrelationInterCT.R inst/app/code/server/rowReplicateAnalysis.R inst/app/code/server/selectData.R inst/app/code/server/CSoverview.R inst/app/code/server/plots.R inst/app/code/server/PCA.R inst/app/code/server/metaData.R inst/app/code/server/RegressionPage/sessionArchiving.R inst/app/code/server/RegressionPage/visualization.R inst/app/code/server/RegressionPage/regression.R inst/app/code/server/RegressionPage/runAnalysis.R inst/app/code/server/RegressionPage/preAnalysis.R inst/app/code/ui/filtCorrelationInterCT.R inst/app/code/ui/rowReplicateAnalysis.R inst/app/code/ui/selectData.R inst/app/code/ui/CSoverview.R inst/app/code/ui/introPage.R inst/app/code/ui/regressionPlot.R inst/app/code/ui/aboutPage.R inst/app/code/ui/PCA.R inst/app/code/ui/metaData.R