API for DriverNet
Drivernet: uncovering somatic driver mutations modulating transcriptional networks in cancer
| Global functions | |
|---|---|
| .applyLogisticFunction | Source code |
| .buildAggregateBipartiteGraph | Source code |
| .calFunctionalImpactScore | Source code |
| .computeDriversHelper | Source code |
| .computeMutatedGeneDegrees | Source code |
| .computePValues | Source code |
| .deleteMutatedGene | Source code |
| .greedyGeneDriverSelection | Source code |
| .makeAdjLists | Source code |
| .neighborGraph | Source code |
| .newGreedy | Source code |
| .preprocessMatricesHelper | Source code |
| DriverNet | Man page |
| DriverNet-package | Man page |
| DriverNetResult-class | Man page |
| actualEvents | Man page |
| actualEvents,DriverNetResult-method | Man page |
| computeDrivers | Man page Source code |
| computeRandomizedResult | Man page Source code |
| drivers | Man page |
| drivers,DriverNetResult-method | Man page |
| getPatientOutlierMatrix | Man page Source code |
| preprocessMatrices | Man page Source code |
| resultSummary | Man page |
| sampleDriversList | Man page |
| sampleGeneNames | Man page |
| sampleInfluenceGraph | Man page |
| samplePatientExpressionMatrix | Man page |
| samplePatientMutationMatrix | Man page |
| samplePatientOutlierMatrix | Man page |
| sampleRandomDriversResult | Man page |
| totalEvents | Man page |
| totalEvents,DriverNetResult-method | Man page |
