getPatientOutlierMatrix: Compute the patient outlier matrix

Description Usage Arguments Value Author(s) See Also Examples

Description

Given a real-value patient expression matrix, compute the patient outlier matrix and remove the genes which are not expressed.

Usage

1
getPatientOutlierMatrix(patExpMatrix, th=2)

Arguments

patExpMatrix

Patient Expression Matrix

th

The threshold, the default value is 2 ( the gene expression values outside the 2 standard deviation range are considered as outliers).

Value

The output patOutMatrix is an input to the computeDrivers method

Author(s)

Ali Bashashati, Reza Haffari, Jiarui Ding, Gavin Ha, Kenneth Liu, Jamie Rosner and Sohrab Shah

Maintainer: Jiarui Ding <[email protected]>

See Also

computeDrivers

Examples

1
2

DriverNet documentation built on May 6, 2019, 2:40 a.m.