resultSummary: Summarize result for drivers ranking.

In DriverNet: Drivernet: uncovering somatic driver mutations modulating transcriptional networks in cancer

Description

Ranks the drivers.

Usage

resultSummary(mainResult, randResult, patMutMatrix, influenceGraph, 
outputFolder = NULL, printToConsole = FALSE)

Arguments

mainResult	An object of DriverNetResult class created by the computeDrivers method.
randResult	A list of vectors representing driver coverage generated by computeRandomizedResult.
patMutMatrix	Patient Mutation Matrix
influenceGraph	Influence Graph Matrix
outputFolder	The folder to store the summary file. If set to NULL, no files will be written. If set to "", the files will be written to the current folder.
printToConsole	If set to TRUE, progress and result of the function will be printed to the console.

Value

A matrix storing the summary result.

Author(s)

Ali Bashashati, Reza Haffari, Jiarui Ding, Gavin Ha, Kenneth Liu, Jamie Rosner and Sohrab Shah

Maintainer: Jiarui Ding <[e-mail]>

Examples

data(sampleDriversList)
data(sampleRandomDriversResult)
data(samplePatientMutationMatrix)
data(sampleInfluenceGraph)

res = resultSummary(sampleDriversList, sampleRandomDriversResult, 
samplePatientMutationMatrix, sampleInfluenceGraph, outputFolder=NULL, 
printToConsole=FALSE)

DriverNet documentation built on Nov. 8, 2020, 10:59 p.m.