DropletUtils: Utilities for Handling Single-Cell Droplet Data

Provides a number of utility functions for handling single-cell (RNA-seq) data from droplet technologies such as 10X Genomics. This includes data loading from count matrices or molecule information files, identification of cells from empty droplets, removal of barcode-swapped pseudo-cells, and downsampling of the count matrix.

Utilities for handling droplet-based single-cell RNA-seq data

Vignettes Man pages API and functions Files

Package details
Author	Aaron Lun [aut, cre], Jonathan Griffiths [ctb], Davis McCarthy [ctb]
Bioconductor views	Coverage DataImport GeneExpression ImmunoOncology RNASeq Sequencing SingleCell Transcriptomics
Maintainer	Aaron Lun <infinite.monkeys.with.keyboards@gmail.com>
License	GPL-3
Version	1.10.3
Package repository	View on Bioconductor
Installation	Install the latest version of this package by entering the following in R: `if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("DropletUtils")`