DropletUtils: Utilities for Handling Single-Cell Droplet Data

Provides a number of utility functions for handling single-cell (RNA-seq) data from droplet technologies such as 10X Genomics. This includes data loading from count matrices or molecule information files, identification of cells from empty droplets, removal of barcode-swapped pseudo-cells, and downsampling of the count matrix.

Package details

AuthorAaron Lun [aut, cre], Jonathan Griffiths [ctb], Davis McCarthy [ctb]
Bioconductor views Coverage DataImport GeneExpression ImmunoOncology RNASeq Sequencing SingleCell Transcriptomics
MaintainerAaron Lun <infinite.monkeys.with.keyboards@gmail.com>
LicenseGPL-3
Version1.8.0
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("DropletUtils")

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DropletUtils documentation built on April 29, 2020, 3:36 a.m.