Files in DropletUtils

Utilities for Handling Single-Cell Droplet Data

NAMESPACE

.BBSoptions

DESCRIPTION

R/RcppExports.R R/downsampleReads.R R/removeAmbience.R R/defaultDrops.R R/encodeSequences.R R/read10xMolInfo.R R/chimericDrops.R R/swappedDrops.R R/read10xCounts.R R/estimateAmbiance.R R/reexports.R R/simCounts.R R/hashedDrops.R R/emptyDrops.R R/barcodeRanks.R R/get10xMolInfoStats.R R/write10xCounts.R R/makeCountMatrix.R R/inferAmbience.R R/sim10xMolInfo.R R/maximumAmbience.R R/namespace.R R/controlAmbience.R

src/Makevars.win

src/Makevars

src/downsample_run.cpp

src/get_cell_barcodes.cpp

src/encode_sequences.cpp

src/RcppExports.cpp

src/group_cells.cpp

src/find_swapped.cpp

src/montecarlo_pval.cpp

src/rand_custom.h

src/hashed_deltas.cpp

src/utils.cpp

src/utils.h

src/rand_custom.cpp

src/find_chimeric.cpp

longtests/testthat.R longtests/testthat/test-read10x.R longtests/testthat/test-molinfo.R

inst/NEWS.Rd

inst/CITATION

inst/doc/DropletUtils.Rmd

inst/doc/DropletUtils.html

inst/doc/DropletUtils.R

build/vignette.rds

tests/testthat.R tests/testthat/test-read10x.R tests/testthat/test-rmamb.R tests/testthat/test-empty.R tests/testthat/test-chimera.R tests/testthat/test-misc.R tests/testthat/test-makecounts.R tests/testthat/test-molinfo.R tests/testthat/test-maxamb.R tests/testthat/test-hashing.R tests/testthat/test-downsample.R tests/testthat/test-encoding.R tests/testthat/test-write10x.R tests/testthat/test-inferamb.R tests/testthat/test-molstats.R tests/testthat/test-swapping.R tests/testthat/test-conamb.R vignettes/DropletUtils.Rmd man/barcodeRanks.Rd man/defaultDrops.Rd man/reexports.Rd man/inferAmbience.Rd man/read10xCounts.Rd man/removeAmbience.Rd man/emptyDrops.Rd man/read10xMolInfo.Rd man/write10xCounts.Rd man/maximumAmbience.Rd man/controlAmbience.Rd man/downsampleReads.Rd man/get10xMolInfoStats.Rd man/swappedDrops.Rd man/encodeSequences.Rd man/chimericDrops.Rd man/makeCountMatrix.Rd man/hashedDrops.Rd man/estimateAmbience.Rd

DropletUtils documentation built on Feb. 4, 2021, 2:01 a.m.