Description Usage Arguments Author(s) References Examples
plot Receiver Operating Characteristic curve for each test.
1 2 3 |
obj |
Object from testDATs(). |
DE.methods |
Method list for differential expression tests. Methods currently available include "Cuffdiff","DESeq","baySeq","edgeR","MetaStats","NOISeq". |
nor.methods |
Normalization method list. Methods currently available include "default"(default normalization for each DE method),"Mode"(Mode normalization),"UQN"(Upper quartile normalization),"NDE"(non-differential expression normalization). |
plot_type |
type option in plot. |
plot_pch |
pch option in plot. |
plot_lwd |
lwd option in plot. |
plot_cex |
cex option in plot. |
Li Juntao and Chia Kuan Hui Burton
Luo Huaien, Li Juntao,Chia Kuan Hui Burton, Shyam Prabhakar, Paul Robson, Niranjan Nagarajan, The importance of study design for detecting differentially abundant features in high-throughput experiments, under review.
1 2 3 4 | data <- generateData(EntityCount=500)
test.obj <- testDATs(data,DE.methods=c("DESeq","edgeR"),nor.methods="default")
auc.obj <- computeAUC(test.obj)
plotROC(auc.obj)
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