API for EDDA
Experimental Design in Differential Abundance analysis

Global functions
BP Man page
Cuffdiff Source code
Cuffdiff_edda Source code
Cuffdiff_nde Source code
Cuffdiff_uqn Source code
DEG.list Source code
DEG.q Source code
DL.plot Source code
DLbio.dat Source code
DLbio.plot Source code
DLbio2.plot Source code
EDDA Man page
EDDA-package Man page
HBR Man page
Lplot Source code
Lplot2 Source code
MA Source code
MD Source code
MD.plot Source code
MODEnormalization Source code
SingleCell Man page
UQNnormalization Source code
Wu Man page
biodetection Source code
busca Source code
calc_qvalues Source code
calc_twosample_ts Source code
call_cuffdiff Source code
cd.plot Source code
computeAUC Man page Source code
computeROC_list Source code
computeROC_matrix Source code
countbio.plot Source code
countsbio.dat Source code
detect_differentially_abundant_feaTRUEs Source code
equalizeLibSizesMode Source code
estimateCommonDispMode Source code
exactTestMode Source code
fdrdata Source code
fdrplot Source code
filterGenesByCounts Source code
fisher.ngs Source code
generateData Man page Source code
int.mult Source code
learn_parameter_DESeq Source code
learn_parameter_edgeR Source code
load_frequency_matrix Source code
long.int Source code
n.menor Source code
noceros Source code
noiseq Source code
noiseqsim Source code
normalizeData Source code
normalizeNDE Source code
outliers Source code
peaks Source code
permute_and_calc_ts Source code
permuted_pvalues Source code
plot.y2 Source code
plotPRC Man page Source code
plotROC Man page Source code
prdata Source code
probdeg Source code
prplot Source code
ranking Source code
readData Source code
readInfo Source code
receive_frequency_matrix Source code
rocdata Source code
rocplot Source code
rpkm Source code
run_Cuffdiff Source code
run_Cuffdiff_Mode Source code
run_Cuffdiff_nde Source code
run_Cuffdiff_uqn Source code
run_DESeq Source code
run_DESeq_Mode Source code
run_DESeq_nde Source code
run_DESeq_uqn Source code
run_MetaStats Source code
run_MetaStats_Mode Source code
run_MetaStats_nde Source code
run_MetaStats_uqn Source code
run_NOISeq Source code
run_NOISeq_Mode Source code
run_NOISeq_nde Source code
run_NOISeq_uqn Source code
run_baySeq Source code
run_baySeq_Mode Source code
run_baySeq_nde Source code
run_baySeq_uqn Source code
run_edgeR Source code
run_edgeR_Mode Source code
run_edgeR_nde Source code
run_edgeR_uqn Source code
satur.plot Source code
satur.plot2 Source code
saturbio.dat Source code
saturbio.plot Source code
sim.samples Source code
sim.samples2 Source code
sinceros Source code Source code
tablacont Source code
testDATs Man page Source code
tmm Source code
uni.mult Source code
uqua Source code
EDDA documentation built on Nov. 1, 2018, 4:21 a.m.