Experimental Design in Differential Abundance analysis

Global functions | |
---|---|

BP | Man page |

Cuffdiff | Source code |

Cuffdiff_edda | Source code |

Cuffdiff_nde | Source code |

Cuffdiff_uqn | Source code |

DEG.list | Source code |

DEG.q | Source code |

DL.plot | Source code |

DLbio.dat | Source code |

DLbio.plot | Source code |

DLbio2.plot | Source code |

EDDA | Man page |

EDDA-package | Man page |

HBR | Man page |

Lplot | Source code |

Lplot2 | Source code |

MA | Source code |

MD | Source code |

MD.plot | Source code |

MODEnormalization | Source code |

SingleCell | Man page |

UQNnormalization | Source code |

Wu | Man page |

biodetection | Source code |

busca | Source code |

calc_qvalues | Source code |

calc_twosample_ts | Source code |

call_cuffdiff | Source code |

cd.plot | Source code |

computeAUC | Man page Source code |

computeROC_list | Source code |

computeROC_matrix | Source code |

countbio.plot | Source code |

countsbio.dat | Source code |

detect_differentially_abundant_feaTRUEs | Source code |

equalizeLibSizesMode | Source code |

estimateCommonDispMode | Source code |

exactTestMode | Source code |

fdrdata | Source code |

fdrplot | Source code |

filterGenesByCounts | Source code |

fisher.ngs | Source code |

generateData | Man page Source code |

int.mult | Source code |

learn_parameter_DESeq | Source code |

learn_parameter_edgeR | Source code |

load_frequency_matrix | Source code |

long.int | Source code |

n.menor | Source code |

noceros | Source code |

noiseq | Source code |

noiseqsim | Source code |

normalizeData | Source code |

normalizeNDE | Source code |

outliers | Source code |

peaks | Source code |

permute_and_calc_ts | Source code |

permuted_pvalues | Source code |

plot.y2 | Source code |

plotPRC | Man page Source code |

plotROC | Man page Source code |

prdata | Source code |

probdeg | Source code |

prplot | Source code |

ranking | Source code |

readData | Source code |

readInfo | Source code |

receive_frequency_matrix | Source code |

rocdata | Source code |

rocplot | Source code |

rpkm | Source code |

run_Cuffdiff | Source code |

run_Cuffdiff_Mode | Source code |

run_Cuffdiff_nde | Source code |

run_Cuffdiff_uqn | Source code |

run_DESeq | Source code |

run_DESeq_Mode | Source code |

run_DESeq_nde | Source code |

run_DESeq_uqn | Source code |

run_MetaStats | Source code |

run_MetaStats_Mode | Source code |

run_MetaStats_nde | Source code |

run_MetaStats_uqn | Source code |

run_NOISeq | Source code |

run_NOISeq_Mode | Source code |

run_NOISeq_nde | Source code |

run_NOISeq_uqn | Source code |

run_baySeq | Source code |

run_baySeq_Mode | Source code |

run_baySeq_nde | Source code |

run_baySeq_uqn | Source code |

run_edgeR | Source code |

run_edgeR_Mode | Source code |

run_edgeR_nde | Source code |

run_edgeR_uqn | Source code |

satur.plot | Source code |

satur.plot2 | Source code |

saturbio.dat | Source code |

saturbio.plot | Source code |

sim.samples | Source code |

sim.samples2 | Source code |

sinceros | Source code Source code |

tablacont | Source code |

testDATs | Man page Source code |

tmm | Source code |

uni.mult | Source code |

uqua | Source code |

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