readGeneTermSets: Read gene-term sets

In FGNet: Functional Gene Networks derived from biological enrichment analyses

Description

Reads a file containing gene-term sets (formatted output from FEA) and transform it into clusters/metagroups and geneTermSets tables to imput to FGNet.

Usage

readGeneTermSets(fileName, tool = NULL, simplifyGage = TRUE)

Arguments

fileName	character. File name of the .txt file.
tool	character. Tool used for the FEA (row name from data(FEA_tools); FEA_tools)
simplifyGage	logical. Only for GAGE: Wether to simplify the results and keep only the essential terms in the clustes.

Value

List formated in the same way as the fea functions.

See Also

Overview of the package: FGNet

Package tutorial: vignette("FGNet-vignette")

FGNet documentation built on Nov. 8, 2020, 5:43 p.m.