FGNet_GUI: FGNet graphical user interface
In FGNet: Functional Gene Networks derived from biological enrichment analyses

Description Usage Arguments Details Value Note See Also Examples

Provides a graphical user interface (GUI) to most FGNet functionalities.

1	FGNet_GUI(geneList = NULL)

geneList

vector. If provided, assigns the value to the genes field. It can be a character vector containing the gene list, or a named numeric vector with the gene expression.

To generate the functional network, first execute or import the Functional Analisis of the gene list with one of the tools in Tab "1 - FEA", then generate the network or the report in Tab "2 - Network".

Opens the GUI. No value is returned. The results of the analyses will be saved in the current working directory.

Available for Windows and Linux. The current version of the GUI is not available for Mac OS X Snow Leopard.

Overview of the package: FGNet

Package tutorial: vignette("FGNet-vignette")

## Not run: 


FGNet_GUI()

# To directly input a gene list (i.e. from a previous analysis):
geneList <- c("YBL084C", "YDL008W", "YDR118W", "YDR301W", "YDR448W", "YFR036W", 
    "YGL240W", "YHR166C", "YKL022C", "YLR102C", "YLR115W", "YLR127C", "YNL172W",
    "YOL149W", "YOR249C")
# Optional gene expression
geneExpr <- setNames(c(rep(1,10),rep(-1,5)), geneList)

FGNet_GUI(geneExpr)


## End(Not run)