Files in FGNet
Functional Gene Networks derived from biological enrichment analyses
NEWS
NAMESPACE
DESCRIPTION
build/vignette.rds
data/organisms.RData
data/groupTypes.RData
data/FEA_tools.RData
data/datalist
data/GOEvidenceCodes.RData
R/private_addGeneLabels.R
R/private_clustersTable.R
R/private_SOAPquery.R
R/GUI_tabFEA_tabOther.R
R/private_buildGeneSets.R
R/0_FGNet_GUI.R
R/private_getJobName.R
R/private_loadInstPkg.R
R/GUI_tabNetwork.R
R/private_createHTML_FEA_header.R
R/GUI_tabNetwork_tabReport.R
R/1a_fea_david.R
R/GUI_tabFEA_tabDavid.R
R/1a_fea_gtLinker_getResults.R
R/GUI_tabFEA_tabGage.R
R/1a_fea_topGO.R
R/GUI_tabFEA_tabGtLinker.R
R/0_FGNet_report.R
R/private_getMGTerms.R
R/GUI_tabNetwork_tabSubNw.R
R/3_clustersDistance.R
R/private_plotFGNet_default.R
R/1a_fea_gage.R
R/private_plotFGNet_bipartite.R
R/getTerms.R
R/GUI_auxFunctions.R
R/GUI_tabNetwork_tabOnlyNw.R
R/1c_readGeneTermSets.R
R/keyWordsTerm.R
R/private_plotFGNet.R
R/1b_format_feaResults.R
R/private_queryArgsAsCharacter.R
R/3_functionalNetwork.R
R/plotSubNetwork.R
R/3_analyzeNetwork.R
R/1b_format_david.R
R/plotGoAncestors.R
R/1a_fea_gtLinker.R
R/GUI_tabNetwork_common.R
R/2_fea2incidMat.R
R/GUI_tabFEA.R
R/private_createHtml.R
R/private_setColors.R
R/GUI_tabFEA_tabTopGO.R
R/GUI_tabHelp.R
vignettes/TermsYeast.png
vignettes/ssGtlinker.png
vignettes/nwExample3.png
vignettes/nwExample2.png
vignettes/ssDavid.png
vignettes/hsa05010_Alzheimer_disease.png
vignettes/FGNet_workflow.png
vignettes/nwExample1.png
vignettes/FGNet_GUI.png
vignettes/FGNet.Rmd
man/readGeneTermSets.Rd
man/fea_david.Rd
man/FGNet-package.Rd
man/fea2incidMat.Rd
man/format_david.Rd
man/FGNet_GUI.Rd
man/clustersDistance.Rd
man/FGNet_report.Rd
man/fea_gage.Rd
man/keywordsTerm.Rd
man/getTerms.Rd
man/functionalNetwork.Rd
man/format_results.Rd
man/data.Rd
man/fea_gtLinker.Rd
man/analyzeNetwork.Rd
man/fea_topGO.Rd
man/plotGoAncestors.Rd
tests/runTests.R
inst/CITATION
inst/doc/FGNet.R
inst/doc/FGNet.html
inst/doc/FGNet.Rmd
inst/examples/DAVID_Yeast_overl6_raw.txt
inst/examples/DAVID_Yeast_raw.txt
inst/unitTests/test_getResults_david.R
inst/unitTests/test_getResults_gtLinker.R
inst/css/functionalNetworks.css
