createTestFraserDataSet: Create a test dataset

In FRASER: Find RAre Splicing Events in RNA-Seq Data

Description

Create a test case dataset based on the test sample annotation to be used in the vignette and to explore the functionallity of the FRASER package. Dependent on the request only the sample annotation or a full fitted model is returned.

Usage

createTestFraserSettings(workingDir = tempdir())

createTestFraserDataSet(workingDir = tempdir(), rerun = FALSE)

Arguments

workingDir	directory where to store HDF5 and RDS files. Defaults to the current tempory R session folder.
rerun	Defaults to FALSE. If set to TRUE it reruns the full fit of the model.

Value

a FraserDataSet object which contains a test case

Examples

fds <- createTestFraserSettings()
fds

fds <- createTestFraserDataSet()
fds

FRASER documentation built on Feb. 3, 2021, 2:01 a.m.