Man pages for FastqCleaner
A Shiny Application for Quality Control, Filtering and Trimming of FASTQ Files
| adapter_filter | Remove full and partial adapters from a ShortReadQ object |
| asc2int | ASCII to integer |
| check_encoding | Check quality encoding |
| check_onclick_ | check onclick |
| complex_filter | Remove sequences with low complexity |
| create_cleanfunction_ | create_cleanfunction_ |
| create_uniform_width | Create fastq/sequences/qualities with uniform width |
| fixed_filter | Remove a fixed number of bases of a ShortReadQ object from 3'... |
| inject_letter_random | Inject a letter in a set of sequences at random positions |
| int2asc | Integer to ASCII |
| isNaturalNumber | Is natural number |
| launch_fqc | Launch FastqCleaner application |
| length_filter | Filter sequences of a FASTQ file by length |
| matching | Remove left and right full and partial patterns |
| messageFun_ | messageFun_ |
| myPlot | myPlot |
| n_filter | Remove sequences with non-identified bases (Ns) from a... |
| outputClean_ | outputClean_ |
| plotA | plotA |
| plotB | plotB |
| plotC | plotC |
| plotD | plotD |
| plotE | plotE |
| plotF | plotF |
| plotG | plotG |
| plotH | plotH |
| plotI | plotI |
| plotJ | plotJ |
| plotObjects | plotObjects Create the information required to construct the... |
| processingFunction_ | processingFunction_ |
| qmean_filter | Filter sequences by their average quality |
| random_length | Create a named object with random sequences and qualities |
| random_qual | Create random qualities for a given encoding |
| random_seq | Create random sequences |
| seq_filter | Remove a set of sequences |
| seq_names | Create sequences names |
| trim3q_filter | Filter sequences with low quality in 3' tails |
| unique_filter | Remove duplicated sequences in a FASTQ file |
