FitHiC: Confidence estimation for intra-chromosomal contact maps

Fit-Hi-C is a tool for assigning statistical confidence estimates to intra-chromosomal contact maps produced by genome-wide genome architecture assays such as Hi-C.

Author
Ferhat Ay [aut] (Python original, https://noble.gs.washington.edu/proj/fit-hi-c/), Timothy L. Bailey [aut], William S. Noble [aut], Ruyu Tan [aut, cre, trl] (R port)
Date of publication
None
Maintainer
Ruyu Tan <rut003@ucsd.edu>
License
GPL (>= 2)
Version
1.0.0

View on Bioconductor

Man pages

FitHiC
Fit-Hi-C

Files in this package

FitHiC/DESCRIPTION
FitHiC/NAMESPACE
FitHiC/R
FitHiC/R/FitHiC.R
FitHiC/R/RcppExports.R
FitHiC/README.md
FitHiC/build
FitHiC/build/vignette.rds
FitHiC/inst
FitHiC/inst/NEWS
FitHiC/inst/doc
FitHiC/inst/doc/fithic.R
FitHiC/inst/doc/fithic.Rmd
FitHiC/inst/doc/fithic.html
FitHiC/inst/extdata
FitHiC/inst/extdata/contactCounts
FitHiC/inst/extdata/contactCounts/Duan_yeast_EcoRI.gz
FitHiC/inst/extdata/fragmentLists
FitHiC/inst/extdata/fragmentLists/Duan_yeast_EcoRI.gz
FitHiC/man
FitHiC/man/FitHiC.Rd
FitHiC/src
FitHiC/src/FitHiC_init.c
FitHiC/src/RcppExports.cpp
FitHiC/src/helper.cpp
FitHiC/vignettes
FitHiC/vignettes/fithic.Rmd