makeVCFHeaderFromGA4GHResponse: makeVCFHeaderFromGA4GHResponse function

In GA4GHclient: A Bioconductor package for accessing GA4GH API data servers

Description

Convert DataFrame output from getVariantSet function to VCFHeader class.

Usage

makeVCFHeaderFromGA4GHResponse(variantSet)

Arguments

variantSet

DataFrame generated by getVariantSet function.

Value

VCFHeader object.

See Also

getVariantSet, VCFHeader, DataFrame

Examples

host <- "http://1kgenomes.ga4gh.org/"
## Not run: 
datasetId <- searchDatasets(host, nrows = 1)$id
variantSetId <- searchVariantSets(host, datasetId, nrows = 1)$id
variantId <- searchVariants(host, variantSetId, "1", 15031, 15031)$id
variant <- getVariant(host, variantId)

makeVCFFromGA4GHResponse(variant)

## End(Not run)

GA4GHclient documentation built on Nov. 8, 2020, 5:47 p.m.