gdcFilterSampleType: Filter out other type of samples
In GDCRNATools: GDCRNATools: an R/Bioconductor package for integrative analysis of lncRNA, mRNA, and miRNA data in GDC
Description
Usage
Arguments
Value
Author(s)
Examples
View source: R/gdcFilterSamples.R
Description
Filter out samples that are neither
Solid Tissue Normal nor Primary Tumor
Usage
1
gdcFilterSampleType(metadata)
Arguments
metadata
metadata parsed from gdcParseMetadata
Value
A filtered dataframe of metadata with Solid Tissue Normal
and Primary Tumor samples only
Author(s)
Ruidong Li and Han Qu
Examples
1
2
3
####### Parse metadata by project id and data type #######
metaMatrix <- gdcParseMetadata(project.id='TARGET-RT', data.type='RNAseq')
metaMatrix <- gdcFilterSampleType(metadata=metaMatrix)
GDCRNATools documentation built on Nov. 27, 2020, 2 a.m.
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Description Usage Arguments Value Author(s) Examples
View source: R/gdcFilterSamples.R
Description
Filter out samples that are neither Solid Tissue Normal nor Primary Tumor
Usage
1 | gdcFilterSampleType(metadata)
|
Arguments
metadata |
metadata parsed from |
Value
A filtered dataframe of metadata with Solid Tissue Normal and Primary Tumor samples only
Author(s)
Ruidong Li and Han Qu
Examples
1 2 3 | ####### Parse metadata by project id and data type #######
metaMatrix <- gdcParseMetadata(project.id='TARGET-RT', data.type='RNAseq')
metaMatrix <- gdcFilterSampleType(metadata=metaMatrix)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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