Description Usage Arguments Value Author(s) Examples
View source: R/gdcRNADownload.R
Download gene expression quantification and isoform expression quantification data from GDC either by providing the manifest file or by sepcifying the project id and data type
1 2 | gdcRNADownload(manifest = NULL, project.id, data.type,
directory = "Data", write.manifest = FALSE, method = "gdc-client")
|
manifest |
menifest file that is downloaded from the GDC cart.
If provided, files whose UUIDs are in the manifest file
will be downloaded via gdc-client, otherwise, |
project.id |
project id in GDC |
data.type |
one of |
directory |
the folder to save downloaded files.
Default is |
write.manifest |
logical, whether to write out the manifest file |
method |
method that is used to download data. Either
|
Downloaded files in the specified directory
Ruidong Li and Han Qu
1 2 3 4 5 6 7 | ####### Download RNA data by menifest file #######
manifest <- 'RNAseq.manifest.txt'
## Not run: gdcRNADownload(manifest=manifest)
####### Download RNA data by project id and data type #######
project <- 'TCGA-PRAD'
## Not run: gdcRNADownload(project.id=project, data.type='RNAseq')
|
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