GEOsearch: GEOsearch
Version 1.2.0

GEOsearch is an extendable search engine for NCBI GEO (Gene Expression Omnibus). Instead of directly searching the term, GEOsearch can find all the gene names contained in the search term and search all the alias of the gene names simultaneously in GEO database. GEOsearch also provides other functions such as summarizing common biology keywords in the search results.

Browse man pages Browse package API and functions Browse package files

AuthorZhicheng Ji, Hongkai Ji
Bioconductor views GUI Software
Date of publicationNone
MaintainerZhicheng Ji <zji4@jhu.edu>
LicenseGPL(>=2)
Version1.2.0
Package repositoryView on Bioconductor
InstallationInstall the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("GEOsearch")

Man pages

BatchDownload: BatchDownload
database: List of species database
GEOsearch: GEOsearch: Extendable Search Engine for Gene Expression...
GEOSearchTerm: GEOSearchTerm
GEOSearchUI: GEOSearchUI
KeyWordFreq: KeyWordFreq
SampleDetail: SampleDetail
term: List of common biology keywords
TermAlias: TermAlias

Functions

BatchDownload Man page Source code
GEOSearchTerm Man page Source code
GEOSearchUI Man page Source code
GEOsearch Man page
GEOsearch-package Man page
KeyWordFreq Man page Source code
SampleDetail Man page Source code
TermAlias Man page Source code
database Man page
mygetURL Source code
onAttach Source code
readURL Source code
term Man page

Files

DESCRIPTION
NAMESPACE
NEWS
R
R/BatchDownload.R
R/GEOSearchUI.R
R/GEOsearch.R
R/GEOsearchterm.R
R/database.R
R/keywordfreq.R
R/sampledetail.R
R/term.R
R/termalias.R
R/utilities.R
R/zzz.R
README.md
build
build/vignette.rds
data
data/database.rda
data/term.rda
inst
inst/doc
inst/doc/GEOsearch.R
inst/doc/GEOsearch.Rnw
inst/doc/GEOsearch.pdf
inst/shiny
inst/shiny/rsconnect
inst/shiny/rsconnect/shinyapps.io
inst/shiny/rsconnect/shinyapps.io/zhiji
inst/shiny/rsconnect/shinyapps.io/zhiji/GEOsearch.dcf
inst/shiny/server.R
inst/shiny/ui.R
inst/shiny/www
inst/shiny/www/ajaxloaderq.gif
inst/shiny/www/busy.js
inst/shiny/www/style.css
man
man/BatchDownload.Rd
man/GEOSearchTerm.Rd
man/GEOSearchUI.Rd
man/GEOsearch.Rd
man/KeyWordFreq.Rd
man/SampleDetail.Rd
man/TermAlias.Rd
man/database.Rd
man/term.Rd
vignettes
vignettes/GEOsearch.Rnw
GEOsearch documentation built on May 20, 2017, 10:02 p.m.