GEOsearch: GEOsearch

GEOsearch is an extendable search engine for NCBI GEO (Gene Expression Omnibus). Instead of directly searching the term, GEOsearch can find all the gene names contained in the search term and search all the alias of the gene names simultaneously in GEO database. GEOsearch also provides other functions such as summarizing common biology keywords in the search results.

Author
Zhicheng Ji, Hongkai Ji
Date of publication
None
Maintainer
Zhicheng Ji <zji4@jhu.edu>
License
GPL(>=2)
Version
1.0.0

View on Bioconductor

Man pages

BatchDownload
BatchDownload
database
List of species database
GEOsearch
GEOsearch: Extendable Search Engine for Gene Expression...
GEOSearchTerm
GEOSearchTerm
GEOSearchUI
GEOSearchUI
KeyWordFreq
KeyWordFreq
SampleDetail
SampleDetail
term
List of common biology keywords
TermAlias
TermAlias

Files in this package

GEOsearch/DESCRIPTION
GEOsearch/NAMESPACE
GEOsearch/NEWS
GEOsearch/R
GEOsearch/R/BatchDownload.R
GEOsearch/R/GEOSearchUI.R
GEOsearch/R/GEOsearch.R
GEOsearch/R/GEOsearchterm.R
GEOsearch/R/database.R
GEOsearch/R/keywordfreq.R
GEOsearch/R/sampledetail.R
GEOsearch/R/term.R
GEOsearch/R/termalias.R
GEOsearch/README.md
GEOsearch/build
GEOsearch/build/vignette.rds
GEOsearch/data
GEOsearch/data/database.rda
GEOsearch/data/term.rda
GEOsearch/inst
GEOsearch/inst/doc
GEOsearch/inst/doc/GEOsearch.R
GEOsearch/inst/doc/GEOsearch.Rnw
GEOsearch/inst/doc/GEOsearch.pdf
GEOsearch/inst/shiny
GEOsearch/inst/shiny/rsconnect
GEOsearch/inst/shiny/rsconnect/shinyapps.io
GEOsearch/inst/shiny/rsconnect/shinyapps.io/zhiji
GEOsearch/inst/shiny/rsconnect/shinyapps.io/zhiji/GEOsearch.dcf
GEOsearch/inst/shiny/server.R
GEOsearch/inst/shiny/ui.R
GEOsearch/inst/shiny/www
GEOsearch/inst/shiny/www/ajaxloaderq.gif
GEOsearch/inst/shiny/www/busy.js
GEOsearch/inst/shiny/www/style.css
GEOsearch/man
GEOsearch/man/BatchDownload.Rd
GEOsearch/man/GEOSearchTerm.Rd
GEOsearch/man/GEOSearchUI.Rd
GEOsearch/man/GEOsearch.Rd
GEOsearch/man/KeyWordFreq.Rd
GEOsearch/man/SampleDetail.Rd
GEOsearch/man/TermAlias.Rd
GEOsearch/man/database.Rd
GEOsearch/man/term.Rd
GEOsearch/vignettes
GEOsearch/vignettes/GEOsearch.Rnw