Generate shell file to download the SRA of multiple GSE or GSM
BatchDownload(namelist, GSMdownloadpath = ".")
A character list of GSE or GSM ID.
A character value specifying the path to download the SRA files on users own Linux/Unix computer.
This function returns a shell file that can download the SRA of multiple GSE or GSM. The shell file should be run on user's own computer with Linux/Unix system and wget installed. The download process is to set up a bunch of directories under the path specified by users (GSMdownloadpath) and download the SRA files inside the paths. Note: it is the users' job to make sure the GSE and GSM names are correct. Otherwise the function will run forever due to inner error control system. Also, it could take a long time for the function to complete if there are lots of GSE series in namelist.
A character string of commands to be run on users' computer.
Zhicheng Ji, Hongkai Ji <email@example.com>
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